Morfeus p2p

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A Python package for calculating molecular features - morfeus/README.md at main digital-chemistry-laboratory/morfeus

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(65 GigaFLOPS) 12 GRIDs and desktop gridsGRID computing connects supercomputing labs (large parallel machines and databases), primarily for scientific computing Desktop grids use PCs for cycle sharing (dedicated or on the edge of the Internet) CCOF: Cluster Computing on the Fly 13 WaveGrid, Riding the wave of idle cycles 14 Peer-to-peer for large systemsLimitations of client/server architecture Benefits of P2P History of P2P systems P2P architectures P2P issues 15 Client/server architectureWell known, powerful, reliable server is a data source Clients request data from server Very successful model WWW (HTTP), FTP, Web services, etc. Server Client Internet * Figure from 16 Client/server limitationsScalability is expensive Presents a single point of failure Requires administration Unused resources at the network edge P2P systems try to address these limitations 17 P2P vocabulary P2P application P2P architecture P2P computingP2P network Peer-based v. P2P Terms are used interchangeably, sometimes sloppily but there are subtle differences in meaning. 18 P2P computing P2P computing is the sharing of computer resources and services by direct exchange between systems. These resources and services include the exchange of information, processing cycles, cache storage, and disk storage for files. P2P computing takes advantage of existing computing power, computer storage and networking connectivity, allowing users to leverage their collective power to the ‘benefit’ of all. * From Publications/Peer-to-Peer_Introduction_Feb.ppt 19 P2P architecture All nodes are both clients and serversProvide and consume data Any node can initiate a connection No centralized data source “The ultimate form of democracy on the Internet” “The ultimate threat to copy-right protection on the Internet” Node Internet * Content from 20 P2P benefits Efficient use of resources ScalabilityUnused bandwidth, storage, processing power at the edge of the network Scalability Consumers of resources also donate resources Aggregate resources grow naturally with utilization Organic scaling Infrastructure-less scaling Reliability (in aggregate) Replicas Geographic distribution No single point of failure Ease of administration Nodes self organize No need to deploy servers to satisfy demand (c.f. scalability) Built-in fault tolerance, replication, and load balancing 21 P2P Challenges Efficient and fair use of resources ScalabilityHow to allocate? How to deliver? How to prevent selfish behavior? How to provide incentives? Scalability How to locate resources in such a large system? How to avoid overuse of the network? How to deal with heterogeneity? Reliability and trustworthiness in open systems (fault tolerance and security) How to prevent or recover from malicious behavior Do we need or want authentication? How to deal with churn? Do we want to guarantee anonymity? Ease of administration and security What about commercial P2P? How to deal with policy issues? 22 P2P uses Overlay NetworksPeer Peer Peer Peer IP Network Overlay Traditional Communication IP Network Tunneling Communication 23 P2P Architectures (Fig. 5.1)Overlay Network Unstructured Structured Architecture Model Centralized Pure P2P Hybrid (hierarchical) DHT 24 P2P Architectures: TradeoffsCentralized P2P architecture - can suffer from bottleneck at the central server, simpler design Pure P2P - sometimes the content cannot be found, can potentially generate a lot of network traffic Hybrid P2P - how to select and locate

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